Variant report

Variant	rs17719718
Chromosome Location	chr9:26293160-26293161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10511771	0.94[AFR][1000 genomes]
rs10967273	0.87[AFR][1000 genomes]
rs10967276	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10967283	0.87[AFR][1000 genomes]
rs12377384	0.84[AMR][1000 genomes]
rs17719825	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56903359	0.89[AFR][1000 genomes]
rs59364378	0.89[AFR][1000 genomes]
rs61341755	0.89[AFR][1000 genomes]
rs73427915	0.94[AFR][1000 genomes]
rs73427980	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1033265	chr9:26242026-26425832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv869744	chr9:26256188-26435849	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv430012	chr9:26257238-26395900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv430014	chr9:26265500-26435047	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2752291	chr9:26265534-26395883	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1018547	chr9:26265534-26424759	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1027596	chr9:26265534-26425832	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1016727	chr9:26265534-26434482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv466327	chr9:26265879-26295831	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	nsv613932	chr9:26265879-26295831	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv892850	chr9:26265879-26298134	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv892851	chr9:26265879-26302903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv613933	chr9:26265879-26417858	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv613934	chr9:26265879-26423082	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv613935	chr9:26273322-26417858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv892852	chr9:26273358-26302903	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
20	nsv613936	chr9:26273358-26417858	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv613937	chr9:26275374-26317307	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
22	nsv518193	chr9:26275964-26302964	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
23	nsv1020092	chr9:26283966-26407717	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv540102	chr9:26283966-26407717	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv1022897	chr9:26287751-26305300	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26290800-26294200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:26291400-26294600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:26292000-26294200	Enhancers	NHDF-Ad	bronchial
4	chr9:26292600-26293400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:26292600-26293400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:26292600-26293400	Enhancers	HSMMtube	muscle
7	chr9:26292600-26294000	Enhancers	Hela-S3	cervix
8	chr9:26292600-26294200	Enhancers	HSMM	muscle
9	chr9:26292800-26293400	Flanking Active TSS	A549	lung
10	chr9:26292800-26293400	Enhancers	HMEC	breast
11	chr9:26292800-26294000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:26292800-26294000	Enhancers	NH-A	brain
13	chr9:26293000-26293200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:26293000-26293400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:26293000-26293400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:26293000-26293400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:26293000-26293400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:26293000-26293400	Enhancers	NHEK	skin
19	chr9:26293000-26293600	Enhancers	Cortex derived primary cultured neurospheres	brain

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