Variant report

Variant	rs177299
Chromosome Location	chr12:47693681-47693682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10881091	1.00[JPT][hapmap]
rs17097704	1.00[JPT][hapmap]
rs17097720	1.00[JPT][hapmap]
rs214651	1.00[JPT][hapmap]
rs214652	1.00[JPT][hapmap]
rs214653	1.00[JPT][hapmap]
rs214689	1.00[AFR][1000 genomes]
rs855121	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47676200-47697200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:47690600-47693800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:47690600-47694200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:47690600-47694200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr12:47690800-47694000	Enhancers	Primary T cells from cord blood	blood
6	chr12:47691200-47694200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:47691400-47694400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr12:47691600-47694200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr12:47691600-47694400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr12:47691600-47694600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr12:47692600-47696200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr12:47693200-47694200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr12:47693200-47694400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr12:47693400-47701400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:47693600-47694400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr12:47693600-47695400	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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