Variant report

Variant	rs855121
Chromosome Location	chr12:47695902-47695903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11834555	1.00[CHB][hapmap]
rs17097704	1.00[JPT][hapmap]
rs17097720	1.00[JPT][hapmap]
rs177299	1.00[AFR][1000 genomes]
rs214643	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs214644	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs214646	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs214647	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs214649	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs214650	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs214651	1.00[JPT][hapmap]
rs214652	1.00[JPT][hapmap]
rs214653	1.00[JPT][hapmap]
rs214689	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214690	0.82[EUR][1000 genomes]
rs7314534	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47676200-47697200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:47692600-47696200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr12:47693400-47701400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:47694200-47700600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr12:47694200-47700800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr12:47694400-47699400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:47695000-47696600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:47695400-47697000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr12:47695400-47697200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr12:47695600-47696200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr12:47695600-47696600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:47695600-47696600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr12:47695800-47696400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr12:47695800-47696400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr12:47695800-47696600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr12:47695800-47696600	Flanking Active TSS	A549	lung
17	chr12:47695800-47696600	Enhancers	K562	blood
18	chr12:47695800-47697000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:47695800-47697600	Enhancers	Primary B cells from peripheral blood	blood
20	chr12:47695800-47698000	Enhancers	NH-A	brain

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