Variant report

Variant	rs17730054
Chromosome Location	chr7:48507075-48507076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1030708	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12718272	0.82[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13233850	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13242917	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243674	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13243769	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13247399	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17662478	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17662496	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17662528	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17730078	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17730090	0.89[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34002712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34154439	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34579225	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35073581	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35137154	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35377328	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35418390	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35479705	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35538113	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35675124	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3902911	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3916019	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929106	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144066	0.83[CEU][hapmap]
rs71547886	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71547888	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71547890	0.81[EUR][1000 genomes]
rs930241	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817336	chr7:48238233-48563988	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1022980	chr7:48243227-48567060	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538833	chr7:48243227-48567060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1032221	chr7:48302789-48546684	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1015399	chr7:48321542-48544359	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2761325	chr7:48409639-48557382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv888007	chr7:48467581-48533508	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48503600-48509000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:48503600-48514200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:48503600-48515800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:48504600-48509200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:48505200-48520000	Weak transcription	Pancreas	Pancrea
6	chr7:48506600-48510400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:48506800-48510600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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