Variant report

Variant	rs17734799
Chromosome Location	chr12:10222786-10222787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10505748	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1488816	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1488817	0.93[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17807434	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs17734799	C3AR1	cis	cerebellum	SCAN
rs17734799	LOC653113	cis	cerebellum	SCAN
rs17734799	NCAPD2	cis	parietal	SCAN
rs17734799	UPF3B	trans	parietal	SCAN
rs17734799	RIMKLB	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10219000-10236800	Weak transcription	Left Ventricle	heart
2	chr12:10220000-10223000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr12:10220600-10222800	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:10220800-10234800	Weak transcription	Placenta	Placenta
5	chr12:10221200-10223400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:10221400-10222800	Enhancers	HUVEC	blood vessel
7	chr12:10221400-10235000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:10222000-10223000	Enhancers	Primary hematopoietic stem cells	blood
9	chr12:10222000-10223400	Enhancers	Primary B cells from cord blood	blood
10	chr12:10222000-10223600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr12:10222000-10224200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr12:10222000-10224200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:10222000-10225400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:10222000-10234800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:10222400-10227600	Weak transcription	Adipose Nuclei	Adipose
16	chr12:10222600-10222800	Enhancers	Psoas Muscle	Psoas
17	chr12:10222600-10223000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr12:10222600-10224000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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