Variant report

Variant	rs17735506
Chromosome Location	chr18:29737077-29737078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10502582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081750	0.91[EUR][1000 genomes]
rs11081751	0.88[EUR][1000 genomes]
rs11661056	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12454857	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12457134	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12457138	0.90[EUR][1000 genomes]
rs12959368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12962060	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1469168	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17804730	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2000670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2000671	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4799636	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4799637	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62095576	0.83[EUR][1000 genomes]
rs62095577	0.81[EUR][1000 genomes]
rs62095578	0.89[EUR][1000 genomes]
rs62095579	0.90[EUR][1000 genomes]
rs62095587	0.90[EUR][1000 genomes]
rs62095588	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67929870	0.88[EUR][1000 genomes]
rs68120106	0.90[EUR][1000 genomes]
rs7232533	0.89[EUR][1000 genomes]
rs7234231	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7240197	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72639475	0.90[EUR][1000 genomes]
rs72942705	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9944759	0.90[EUR][1000 genomes]
rs9944778	0.90[EUR][1000 genomes]
rs9952622	0.90[EUR][1000 genomes]
rs9955753	0.91[EUR][1000 genomes]
rs9964960	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv32777	chr18:29737074-29738017	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17735506	RNF138	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29730400-29738000	Weak transcription	Fetal Lung	lung
2	chr18:29736200-29738200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr18:29736400-29738200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr18:29736600-29738000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr18:29736800-29737400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr18:29736800-29738200	Enhancers	Monocytes-CD14+_RO01746	blood

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