Variant report

Variant	rs11081751
Chromosome Location	chr18:29738111-29738112
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29737793..29738341-chr18:30132122..30132837,2	MCF-7	breast:
2	chr18:29737738..29738425-chr18:30129431..30129978,2	MCF-7	breast:
3	chr18:29737699..29739046-chr18:30132133..30133008,6	MCF-7	breast:
4	chr18:29737678..29740541-chr18:29744932..29747295,2	MCF-7	breast:
5	chr18:29737731..29738647-chr18:30131030..30131759,2	MCF-7	breast:
6	chr18:29737713..29738256-chr18:30129386..30129926,2	MCF-7	breast:
7	chr18:29737720..29738653-chr18:30132086..30132779,5	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10502582	0.88[EUR][1000 genomes]
rs11081746	0.82[JPT][hapmap]
rs11661056	0.86[EUR][1000 genomes]
rs12458851	0.81[JPT][hapmap]
rs12959368	0.86[EUR][1000 genomes]
rs12962060	0.88[EUR][1000 genomes]
rs1469168	0.87[EUR][1000 genomes]
rs17735506	0.88[EUR][1000 genomes]
rs17804730	0.86[EUR][1000 genomes]
rs1808891	0.81[JPT][hapmap]
rs2000670	0.89[EUR][1000 genomes]
rs4799636	0.89[EUR][1000 genomes]
rs4799637	0.89[EUR][1000 genomes]
rs7234231	0.87[EUR][1000 genomes]
rs9676102	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11081751	RNF138	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29736200-29738200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr18:29736400-29738200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr18:29736800-29738200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr18:29737600-29738200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr18:29737600-29738200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr18:29737600-29738600	Bivalent Enhancer	Dnd41	blood
7	chr18:29737800-29738200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:29737800-29738200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr18:29737800-29738200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr18:29737800-29738200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr18:29737800-29738200	Enhancers	Colon Smooth Muscle	Colon
12	chr18:29737800-29738200	Enhancers	Fetal Brain Female	brain
13	chr18:29737800-29738200	Enhancers	Fetal Intestine Small	intestine
14	chr18:29737800-29738400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr18:29737800-29738400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr18:29737800-29738600	Active TSS	H1 Cell Line	embryonic stem cell
17	chr18:29737800-29738600	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr18:29737800-29738600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr18:29737800-29738600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr18:29737800-29738600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr18:29738000-29738200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr18:29738000-29738200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr18:29738000-29738200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
24	chr18:29738000-29738200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr18:29738000-29738200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr18:29738000-29738200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
27	chr18:29738000-29738200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr18:29738000-29738200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr18:29738000-29738200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr18:29738000-29738200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr18:29738000-29738200	Enhancers	Adipose Nuclei	Adipose
32	chr18:29738000-29738200	Enhancers	Liver	Liver
33	chr18:29738000-29738200	Enhancers	Brain Anterior Caudate	brain
34	chr18:29738000-29738200	Enhancers	Brain Hippocampus Middle	brain
35	chr18:29738000-29738200	Enhancers	Brain Substantia Nigra	brain
36	chr18:29738000-29738200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr18:29738000-29738200	Enhancers	Fetal Brain Male	brain
38	chr18:29738000-29738200	Enhancers	Fetal Intestine Large	intestine
39	chr18:29738000-29738200	Enhancers	Fetal Kidney	kidney
40	chr18:29738000-29738200	Enhancers	Fetal Lung	lung
41	chr18:29738000-29738200	Enhancers	Fetal Muscle Leg	muscle
42	chr18:29738000-29738200	Enhancers	Rectal Smooth Muscle	rectum
43	chr18:29738000-29738200	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr18:29738000-29738200	Enhancers	Stomach Mucosa	stomach
45	chr18:29738000-29738200	Enhancers	HMEC	breast
46	chr18:29738000-29738200	Enhancers	HUVEC	blood vessel
47	chr18:29738000-29738200	Enhancers	NHDF-Ad	bronchial
48	chr18:29738000-29738400	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr18:29738000-29738400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr18:29738000-29738400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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