Variant report

Variant	rs9676102
Chromosome Location	chr18:29719451-29719452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29671748..29674149-chr18:29717324..29719515,2	K562	blood:
2	chr18:29714493..29716790-chr18:29718511..29720452,2	K562	blood:

Variant related genes	Relation type
ENSG00000265008	Chromatin interaction
ENSG00000134758	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10048285	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10048287	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1054667	0.87[GIH][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10853418	0.80[EUR][1000 genomes]
rs11081741	0.87[MEX][hapmap]
rs11081746	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11081747	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11081750	0.88[ASN][1000 genomes]
rs11663563	0.82[CEU][hapmap];0.94[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12454857	0.88[ASN][1000 genomes]
rs12455044	0.81[ASN][1000 genomes]
rs12457134	0.81[ASN][1000 genomes]
rs12458548	0.80[EUR][1000 genomes]
rs12458837	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12458851	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12604223	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12605137	0.82[CEU][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs1808891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010813	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2018380	0.85[CEU][hapmap];0.94[GIH][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2048245	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3760568	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3980846	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3980848	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4799326	0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4799629	0.96[CEU][hapmap];0.94[GIH][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs4799632	0.82[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap]
rs4799633	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62093949	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62093950	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62095576	0.81[ASN][1000 genomes]
rs62095578	0.88[ASN][1000 genomes]
rs62095579	0.88[ASN][1000 genomes]
rs62095587	0.87[ASN][1000 genomes]
rs67929870	0.88[ASN][1000 genomes]
rs7232533	0.87[ASN][1000 genomes]
rs7240197	0.82[ASN][1000 genomes]
rs72639475	0.88[ASN][1000 genomes]
rs993897	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944759	0.88[ASN][1000 genomes]
rs9944778	0.88[ASN][1000 genomes]
rs9952622	0.88[ASN][1000 genomes]
rs9955753	0.85[ASN][1000 genomes]
rs9964960	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9676102	RNF138	cis	multi-tissue	Pritchard
rs9676102	RNF138	Cis_1M	lymphoblastoid	RTeQTL
rs9676102	RNF138	cis	Esophagus Mucosa	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29709600-29719600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr18:29714800-29720200	Weak transcription	Fetal Intestine Small	intestine
3	chr18:29718200-29719800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr18:29719000-29719600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr18:29719400-29721200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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