Variant report

Variant	rs17735921
Chromosome Location	chr7:13944896-13944897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10486067	0.83[EUR][1000 genomes]
rs17679963	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17735440	0.83[EUR][1000 genomes]
rs17735994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736124	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801091	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020310	chr7:13839681-14015794	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538738	chr7:13839681-14015794	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1020543	chr7:13851470-14021121	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv606277	chr7:13907827-13967377	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv606278	chr7:13931182-13959406	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13920600-13945600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:13930200-13945200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:13930400-13945200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:13930600-13948200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:13930800-13951800	Weak transcription	Fetal Kidney	kidney
6	chr7:13930800-13971000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:13931000-13947800	Weak transcription	Right Ventricle	heart
8	chr7:13932000-13952800	Weak transcription	Adipose Nuclei	Adipose
9	chr7:13932200-13949600	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:13932200-13949600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:13933800-13983600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:13934000-13945200	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:13934200-13947600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:13934200-13968000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:13934800-13959800	Weak transcription	Pancreas	Pancrea
16	chr7:13935000-13948400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:13935800-13951600	Weak transcription	Aorta	Aorta
18	chr7:13937600-13945200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:13938200-13948000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:13938400-13948400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:13939200-13952200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:13939400-13951200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:13939800-13945200	Weak transcription	Liver	Liver
24	chr7:13939800-13945400	Weak transcription	Left Ventricle	heart
25	chr7:13940800-13945600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:13942000-13948400	Weak transcription	Fetal Brain Female	brain
27	chr7:13942600-13948000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:13943000-13945200	Enhancers	NHDF-Ad	bronchial
29	chr7:13943000-13948000	Weak transcription	HUVEC	blood vessel
30	chr7:13943000-13948200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:13943600-13945000	Enhancers	NH-A	brain
32	chr7:13943600-13945600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:13943600-13949600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:13943800-13945400	Strong transcription	Fetal Brain Male	brain
35	chr7:13943800-13946400	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr7:13944000-13945000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr7:13944000-13945400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:13944000-13948000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:13944200-13946200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:13944200-13946400	Strong transcription	Fetal Lung	lung
41	chr7:13944400-13958600	Weak transcription	NHLF	lung
42	chr7:13944600-13945200	Enhancers	Fetal Heart	heart
43	chr7:13944600-13947400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:13944600-13948400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr7:13944600-13948400	Weak transcription	Osteobl	bone
46	chr7:13944800-13945000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links