Variant report

Variant	rs17736364
Chromosome Location	chr8:95342133-95342134
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10093726	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10097262	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10102233	1.00[YRI][hapmap]
rs10109060	0.82[AFR][1000 genomes]
rs12681366	0.96[YRI][hapmap]
rs13280849	1.00[YRI][hapmap]
rs13281619	0.95[YRI][hapmap]
rs1598713	1.00[YRI][hapmap]
rs16916788	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap]
rs16916802	0.96[YRI][hapmap]
rs1872889	0.96[YRI][hapmap]
rs2046663	0.92[ASW][hapmap];0.84[YRI][hapmap]
rs2046664	1.00[YRI][hapmap]
rs2289455	0.82[CHB][hapmap]
rs2289456	0.82[CHB][hapmap]
rs2291439	0.92[ASW][hapmap];0.96[YRI][hapmap]
rs2381828	0.82[YRI][hapmap]
rs2930958	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs2930961	0.88[YRI][hapmap]
rs3762053	0.82[CHB][hapmap]
rs4735284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735288	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs56193240	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6997115	0.82[AFR][1000 genomes]
rs73268196	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73270106	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7824722	0.91[AFR][1000 genomes]
rs7831073	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95339200-95343600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:95340400-95346400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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