Variant report

Variant	rs73270106
Chromosome Location	chr8:95355430-95355431
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95342938..95344823-chr8:95354569..95356336,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10093726	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10097262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10102233	0.81[AFR][1000 genomes]
rs10109060	0.87[AFR][1000 genomes]
rs13280849	0.81[AFR][1000 genomes]
rs13281619	0.82[AFR][1000 genomes]
rs1598713	0.83[AFR][1000 genomes]
rs16916788	0.81[AFR][1000 genomes]
rs16916796	0.82[AFR][1000 genomes]
rs17736364	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4735284	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4735288	0.85[AFR][1000 genomes]
rs56193240	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56285115	0.82[AFR][1000 genomes]
rs58826082	0.85[AFR][1000 genomes]
rs66787185	0.83[AFR][1000 genomes]
rs67639046	0.83[AFR][1000 genomes]
rs6997115	0.87[AFR][1000 genomes]
rs73268196	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7824722	0.89[AFR][1000 genomes]
rs7825731	0.83[AFR][1000 genomes]
rs7831073	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95353800-95359000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:95355000-95355800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:95355000-95355800	Enhancers	NHEK	skin
4	chr8:95355000-95356200	Enhancers	HMEC	breast
5	chr8:95355200-95355800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr8:95355200-95355800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:95355400-95355800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:95355400-95355800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:95355400-95356000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:95355400-95356200	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links