Variant report

Variant	rs58826082
Chromosome Location	chr8:95363715-95363716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10097262	0.81[AFR][1000 genomes]
rs10102233	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10102496	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10109060	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1011249	0.87[ASN][1000 genomes]
rs10112606	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10216902	0.86[ASN][1000 genomes]
rs10504936	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10956911	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12545262	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12675415	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12676373	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12679347	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12680029	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12680213	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12681366	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13280849	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13281619	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1561648	0.86[ASN][1000 genomes]
rs1598713	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16916760	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16916788	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16916796	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16916802	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1872889	0.87[ASN][1000 genomes]
rs2043987	0.85[ASN][1000 genomes]
rs2291439	0.88[ASN][1000 genomes]
rs28413800	0.85[ASN][1000 genomes]
rs28641679	0.92[ASN][1000 genomes]
rs2919660	0.86[ASN][1000 genomes]
rs2919662	0.86[ASN][1000 genomes]
rs2919672	0.87[ASN][1000 genomes]
rs2919673	0.87[ASN][1000 genomes]
rs2921389	0.86[ASN][1000 genomes]
rs2930958	0.87[ASN][1000 genomes]
rs2930961	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2930962	0.87[ASN][1000 genomes]
rs2930968	0.86[ASN][1000 genomes]
rs2930970	0.86[ASN][1000 genomes]
rs2930971	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2931633	0.88[ASN][1000 genomes]
rs2960122	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3019146	0.88[ASN][1000 genomes]
rs3019154	0.87[ASN][1000 genomes]
rs3019279	0.87[ASN][1000 genomes]
rs35889192	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4735288	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735292	0.89[ASN][1000 genomes]
rs56193240	0.84[AFR][1000 genomes]
rs56285115	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66787185	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67639046	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67808321	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6980687	0.85[ASN][1000 genomes]
rs6991077	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6997115	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716770	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72672679	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73270106	0.85[AFR][1000 genomes]
rs7824722	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7825731	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831073	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95355800-95365200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:95355800-95365400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:95360800-95365600	Weak transcription	A549	lung
4	chr8:95363000-95385200	Weak transcription	Primary T cells from cord blood	blood
5	chr8:95363400-95364200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:95363600-95364200	Enhancers	NHDF-Ad	bronchial

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