Variant report

Variant	rs16916760
Chromosome Location	chr8:95369109-95369110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:94995005..94995988-chr8:95369058..95370213,3	MCF-7	breast:
2	chr8:95006655..95007631-chr8:95369017..95370554,8	MCF-7	breast:
3	chr8:95002556..95005215-chr8:95367344..95369577,2	MCF-7	breast:
4	chr8:95091381..95092659-chr8:95368728..95369872,3	K562	blood:
5	chr8:95323813..95324493-chr8:95368999..95369579,2	MCF-7	breast:
6	chr8:95091715..95092919-chr8:95368889..95370253,5	MCF-7	breast:
7	chr8:95003190..95004202-chr8:95369017..95370691,18	MCF-7	breast:
8	chr8:95104691..95105481-chr8:95369009..95369598,2	MCF-7	breast:
9	chr8:95003317..95003890-chr8:95369077..95370310,3	MCF-7	breast:
10	chr8:95091650..95093095-chr8:95368964..95370356,24	MCF-7	breast:
11	chr8:95091991..95093563-chr8:95368599..95370272,2	MCF-7	breast:

No data

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10087254	0.86[ASN][1000 genomes]
rs10087503	0.85[ASN][1000 genomes]
rs10095298	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10102233	0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs10109060	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10216902	0.95[CHB][hapmap]
rs10464877	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504936	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs10808669	0.86[ASN][1000 genomes]
rs10956911	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956913	0.85[ASN][1000 genomes]
rs10956914	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12375355	0.86[ASN][1000 genomes]
rs12545262	0.95[CHB][hapmap]
rs12549544	0.85[ASN][1000 genomes]
rs12674614	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12675415	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12676373	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12680342	0.82[EUR][1000 genomes]
rs12681366	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs12681504	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12682038	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12682524	0.85[ASN][1000 genomes]
rs13280849	0.95[CHB][hapmap]
rs13281619	0.95[CHB][hapmap]
rs1372048	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs1561648	0.95[CHB][hapmap]
rs1598713	0.95[CHB][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16916788	0.95[CHB][hapmap]
rs16916802	0.95[CHB][hapmap]
rs1872889	0.95[CHB][hapmap]
rs2011246	0.86[ASN][1000 genomes]
rs2043988	0.86[ASN][1000 genomes]
rs2046664	0.86[CHB][hapmap]
rs2165405	0.87[ASN][1000 genomes]
rs2171440	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2197003	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2197004	0.86[ASN][1000 genomes]
rs2291439	1.00[CHB][hapmap]
rs2381793	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2381886	0.86[ASN][1000 genomes]
rs2919655	0.82[ASN][1000 genomes]
rs2919656	0.86[ASN][1000 genomes]
rs2919657	0.86[ASN][1000 genomes]
rs2919658	0.86[ASN][1000 genomes]
rs2919659	0.86[ASN][1000 genomes]
rs2919662	0.95[CHB][hapmap]
rs2919664	0.86[ASN][1000 genomes]
rs2919667	0.86[ASN][1000 genomes]
rs2919668	0.86[ASN][1000 genomes]
rs2919670	0.86[ASN][1000 genomes]
rs2921386	0.86[ASN][1000 genomes]
rs2930956	0.86[ASN][1000 genomes]
rs2930958	0.95[CHB][hapmap]
rs2930961	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs2930962	0.87[CHB][hapmap]
rs2930963	0.87[ASN][1000 genomes]
rs2930964	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2930968	0.95[CHB][hapmap]
rs2931631	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2931632	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2960121	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019145	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3019146	0.95[CHB][hapmap]
rs3019147	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019149	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019150	0.87[ASN][1000 genomes]
rs3019154	0.95[CHB][hapmap]
rs3019155	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019156	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019277	0.87[ASN][1000 genomes]
rs3019278	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs3019279	0.95[CHB][hapmap]
rs3019280	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs3019281	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs3019282	0.87[ASN][1000 genomes]
rs3019284	0.86[ASN][1000 genomes]
rs35918414	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735288	0.95[CHB][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4735291	0.90[ASN][1000 genomes]
rs4735292	0.95[CHB][hapmap]
rs55963151	0.86[ASN][1000 genomes]
rs58826082	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66787185	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67639046	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67808321	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6980687	0.95[CHB][hapmap]
rs6991077	0.81[ASN][1000 genomes]
rs6997115	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999103	0.86[ASN][1000 genomes]
rs6999976	0.86[ASN][1000 genomes]
rs716770	0.81[ASN][1000 genomes]
rs72672679	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72674819	0.86[ASN][1000 genomes]
rs752460	0.87[CEU][hapmap]
rs7825731	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7831073	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9297939	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95363000-95385200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:95364200-95369400	Weak transcription	NHDF-Ad	bronchial
3	chr8:95365800-95369200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:95365800-95369200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:95365800-95369200	Weak transcription	HMEC	breast
6	chr8:95365800-95369600	Weak transcription	NH-A	brain
7	chr8:95365800-95378800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:95365800-95385000	Weak transcription	NHEK	skin
9	chr8:95365800-95417200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:95366000-95369200	Weak transcription	Fetal Intestine Large	intestine
11	chr8:95366000-95369200	Weak transcription	A549	lung
12	chr8:95366000-95369600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:95366000-95372400	Weak transcription	Fetal Intestine Small	intestine
14	chr8:95366000-95375600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:95369000-95370000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr8:95369000-95370000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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