Variant report

Variant	rs12676373
Chromosome Location	chr8:95362118-95362119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10087254	0.84[ASN][1000 genomes]
rs10087503	0.84[ASN][1000 genomes]
rs10095298	0.84[ASN][1000 genomes]
rs10109060	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10464877	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10504936	0.80[ASN][1000 genomes]
rs10808669	0.84[ASN][1000 genomes]
rs10956911	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10956913	0.84[ASN][1000 genomes]
rs10956914	0.84[ASN][1000 genomes]
rs12375355	0.84[ASN][1000 genomes]
rs12549544	0.84[ASN][1000 genomes]
rs12674614	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12675415	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12680342	0.82[EUR][1000 genomes]
rs12681504	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12682038	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12682524	0.84[ASN][1000 genomes]
rs1372048	0.84[ASN][1000 genomes]
rs1598713	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16916760	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2011246	0.84[ASN][1000 genomes]
rs2043988	0.84[ASN][1000 genomes]
rs2165405	0.86[ASN][1000 genomes]
rs2171440	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2197003	0.84[ASN][1000 genomes]
rs2197004	0.84[ASN][1000 genomes]
rs2381793	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2381886	0.84[ASN][1000 genomes]
rs2919655	0.82[ASN][1000 genomes]
rs2919656	0.84[ASN][1000 genomes]
rs2919657	0.84[ASN][1000 genomes]
rs2919658	0.84[ASN][1000 genomes]
rs2919659	0.84[ASN][1000 genomes]
rs2919664	0.84[ASN][1000 genomes]
rs2919667	0.84[ASN][1000 genomes]
rs2919668	0.84[ASN][1000 genomes]
rs2919670	0.84[ASN][1000 genomes]
rs2921386	0.84[ASN][1000 genomes]
rs2930956	0.84[ASN][1000 genomes]
rs2930963	0.86[ASN][1000 genomes]
rs2930964	0.86[ASN][1000 genomes]
rs2931631	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2931632	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2960121	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3019145	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3019147	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3019149	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3019150	0.86[ASN][1000 genomes]
rs3019155	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3019156	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3019277	0.86[ASN][1000 genomes]
rs3019278	0.86[ASN][1000 genomes]
rs3019280	0.86[ASN][1000 genomes]
rs3019281	0.86[ASN][1000 genomes]
rs3019282	0.86[ASN][1000 genomes]
rs3019284	0.84[ASN][1000 genomes]
rs35918414	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4735288	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4735291	0.89[ASN][1000 genomes]
rs55963151	0.84[ASN][1000 genomes]
rs58826082	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66787185	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67639046	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67808321	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6991077	0.80[ASN][1000 genomes]
rs6997115	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6999103	0.84[ASN][1000 genomes]
rs6999976	0.84[ASN][1000 genomes]
rs716770	0.80[ASN][1000 genomes]
rs72672679	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72674819	0.84[ASN][1000 genomes]
rs7825731	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7831073	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9297939	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95355800-95365200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:95355800-95365400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:95360800-95365600	Weak transcription	A549	lung

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