Variant report

Variant	rs28413800
Chromosome Location	chr8:95350098-95350099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10102496	0.80[ASN][1000 genomes]
rs10109060	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10112606	0.80[ASN][1000 genomes]
rs10504936	0.81[ASN][1000 genomes]
rs10956911	0.83[ASN][1000 genomes]
rs13280849	0.80[ASN][1000 genomes]
rs1598713	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1813167	0.81[EUR][1000 genomes]
rs2445699	0.81[EUR][1000 genomes]
rs2450554	0.81[EUR][1000 genomes]
rs35889192	0.80[ASN][1000 genomes]
rs4735288	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58826082	0.85[ASN][1000 genomes]
rs66787185	0.85[ASN][1000 genomes]
rs67639046	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67808321	0.83[ASN][1000 genomes]
rs6991077	0.81[ASN][1000 genomes]
rs6997115	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs716770	0.81[ASN][1000 genomes]
rs7824722	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7825731	0.85[ASN][1000 genomes]
rs7831073	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95344000-95352400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:95347400-95355400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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