Variant report

Variant	rs1773735
Chromosome Location	chr1:223322837-223322838
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223314781..223317193-chr1:223322328..223323932,2	MCF-7	breast:
2	chr1:223322186..223322942-chr1:223617607..223618444,2	MCF-7	breast:
3	chr1:223322701..223324209-chr1:223338729..223341132,2	MCF-7	breast:
4	chr1:223322225..223323066-chr1:223842691..223843630,2	MCF-7	breast:
5	chr1:223322245..223323048-chr1:223608788..223609563,2	MCF-7	breast:
6	chr1:223305679..223307985-chr1:223321092..223323680,2	K562	blood:
7	chr1:223322294..223323083-chr1:223870827..223871458,2	MCF-7	breast:
8	chr1:223322170..223323076-chr1:223617469..223618437,3	MCF-7	breast:
9	chr1:223322286..223323076-chr1:223617469..223617980,2	MCF-7	breast:
10	chr1:223322294..223323083-chr1:223870827..223871458,3	MCF-7	breast:
11	chr1:223314688..223318416-chr1:223322771..223324884,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1612431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1613248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640805	1.00[AFR][1000 genomes]
rs1640806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640808	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640862	1.00[AMR][1000 genomes]
rs1773740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5744096	1.00[AMR][1000 genomes]
rs5744098	1.00[AMR][1000 genomes]
rs725083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs851159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1014896	chr1:223070446-223327185	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223317600-223326800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:223321400-223324200	Enhancers	Fetal Muscle Leg	muscle
3	chr1:223321600-223323000	Weak transcription	Thymus	Thymus
4	chr1:223321800-223325400	Weak transcription	Gastric	stomach
5	chr1:223322000-223323400	Enhancers	Placenta	Placenta
6	chr1:223322600-223323200	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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