Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223322701..223324209-chr1:223338729..223341132,2	MCF-7	breast:
2	chr1:223314688..223318416-chr1:223322771..223324884,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187554	Chromatin interaction
ENSG00000236846	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1612431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1613248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640805	1.00[AFR][1000 genomes]
rs1640806	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640808	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1640862	1.00[AMR][1000 genomes]
rs1773735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1773748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5744096	1.00[AMR][1000 genomes]
rs5744098	1.00[AMR][1000 genomes]
rs851159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1014896	chr1:223070446-223327185	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223317600-223326800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:223321400-223324200	Enhancers	Fetal Muscle Leg	muscle
3	chr1:223321800-223325400	Weak transcription	Gastric	stomach
4	chr1:223323200-223327000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:223323600-223325400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:223324000-223326800	Weak transcription	Placenta	Placenta

Quick Search: