Variant report

Variant	rs17740576
Chromosome Location	chr9:103177334-103177335
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103176909..103179543-chr9:103186659..103188308,2	K562	blood:
2	chr9:103171653..103179256-chr9:103186952..103193020,13	MCF-7	breast:
3	chr9:103174960..103177942-chr9:103180157..103183043,3	K562	blood:
4	chr9:103115166..103116974-chr9:103176601..103179072,2	K562	blood:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction
ENSG00000136891	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1016176	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1016177	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17741842	0.84[ASW][hapmap];0.95[GIH][hapmap]
rs17813447	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17813663	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17813801	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17813854	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17814768	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs17814828	0.95[GIH][hapmap]
rs2026998	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2151107	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35438121	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41274963	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4395949	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56179916	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56313595	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56720423	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57241635	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58030694	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58698990	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59668196	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61306839	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61386923	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7041189	0.95[GIH][hapmap]
rs72733393	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72733395	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72733397	0.89[EUR][1000 genomes]
rs72735110	0.80[EUR][1000 genomes]
rs73655529	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73655530	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73655531	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73655532	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73655533	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73655534	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73655535	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73655536	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73655537	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73655539	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655540	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655541	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655542	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655543	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655544	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655545	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655546	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655547	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655549	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73655550	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73655551	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73655553	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73655554	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7865385	0.95[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103174600-103188800	Weak transcription	Esophagus	oesophagus
2	chr9:103174800-103177600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:103176800-103188000	Weak transcription	K562	blood

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