Variant report

Variant	rs72733397
Chromosome Location	chr9:103171279-103171280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103169457..103171341-chr9:103175056..103176650,2	K562	blood:
2	chr9:103169516..103171661-chr9:103172507..103175663,3	MCF-7	breast:
3	chr9:103170121..103172930-chr9:103214537..103217403,2	K562	blood:
4	chr9:103169067..103171362-chr9:103188981..103190855,2	MCF-7	breast:
5	chr9:103169657..103172715-chr9:103188137..103190084,3	K562	blood:
6	chr9:103169579..103171733-chr9:103173238..103174816,2	K562	blood:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1016176	0.86[EUR][1000 genomes]
rs1016177	0.86[EUR][1000 genomes]
rs17740576	0.89[EUR][1000 genomes]
rs17813447	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17813663	0.85[EUR][1000 genomes]
rs17813801	0.84[EUR][1000 genomes]
rs17813854	0.84[EUR][1000 genomes]
rs2026998	0.87[EUR][1000 genomes]
rs2151107	0.90[EUR][1000 genomes]
rs35438121	0.85[EUR][1000 genomes]
rs41274963	0.85[EUR][1000 genomes]
rs4395949	0.87[EUR][1000 genomes]
rs56179916	0.89[EUR][1000 genomes]
rs56313595	0.86[EUR][1000 genomes]
rs56720423	0.84[EUR][1000 genomes]
rs57241635	0.86[EUR][1000 genomes]
rs58030694	0.86[EUR][1000 genomes]
rs58698990	0.84[EUR][1000 genomes]
rs59668196	0.81[EUR][1000 genomes]
rs61306839	0.85[EUR][1000 genomes]
rs61386923	0.86[EUR][1000 genomes]
rs72733393	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72733395	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73655529	0.89[EUR][1000 genomes]
rs73655530	0.87[EUR][1000 genomes]
rs73655531	0.87[EUR][1000 genomes]
rs73655532	0.87[EUR][1000 genomes]
rs73655533	0.87[EUR][1000 genomes]
rs73655534	0.87[EUR][1000 genomes]
rs73655535	0.87[EUR][1000 genomes]
rs73655536	0.87[EUR][1000 genomes]
rs73655537	0.87[EUR][1000 genomes]
rs73655539	0.86[EUR][1000 genomes]
rs73655540	0.86[EUR][1000 genomes]
rs73655541	0.86[EUR][1000 genomes]
rs73655542	0.86[EUR][1000 genomes]
rs73655543	0.86[EUR][1000 genomes]
rs73655544	0.86[EUR][1000 genomes]
rs73655545	0.86[EUR][1000 genomes]
rs73655546	0.86[EUR][1000 genomes]
rs73655547	0.86[EUR][1000 genomes]
rs73655549	0.85[EUR][1000 genomes]
rs73655550	0.85[EUR][1000 genomes]
rs73655551	0.84[EUR][1000 genomes]
rs73655553	0.84[EUR][1000 genomes]
rs73655554	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103169400-103173600	Weak transcription	Right Atrium	heart
2	chr9:103169800-103173600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:103171000-103171400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:103171000-103171400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:103171200-103171400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:103171200-103171400	Enhancers	Primary B cells from peripheral blood	blood
7	chr9:103171200-103171400	Enhancers	Primary hematopoietic stem cells	blood
8	chr9:103171200-103171400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:103171200-103171400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:103171200-103171400	Bivalent Enhancer	Esophagus	oesophagus
11	chr9:103171200-103171600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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