Variant report

Variant	rs17743593
Chromosome Location	chr9:16809958-16809959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10810632	0.85[CEU][hapmap]
rs2243614	0.85[CEU][hapmap]
rs2254193	0.85[CEU][hapmap]
rs2254468	0.85[CEU][hapmap]
rs4961760	0.85[CEU][hapmap]
rs6475082	0.85[CEU][hapmap]
rs9407777	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16796200-16810400	Weak transcription	HSMM	muscle
2	chr9:16796200-16813400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:16796200-16816800	Weak transcription	HSMMtube	muscle
4	chr9:16796400-16824400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:16799200-16813200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:16802800-16810000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:16802800-16811800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:16803800-16811800	Weak transcription	NHLF	lung
9	chr9:16804000-16811800	Weak transcription	Fetal Stomach	stomach
10	chr9:16804000-16812000	Weak transcription	Ovary	ovary
11	chr9:16805600-16811000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:16806200-16810000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:16806200-16810800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr9:16806600-16810600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:16806800-16811200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:16807400-16810200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:16808000-16813600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:16808400-16811600	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:16808600-16812000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:16808800-16810000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr9:16808800-16812400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr9:16809000-16810800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:16809000-16810800	Strong transcription	Osteobl	bone
24	chr9:16809200-16810600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:16809200-16810800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:16809200-16811800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:16809200-16812200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:16809400-16810600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr9:16809400-16812000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:16809400-16814000	Weak transcription	Fetal Lung	lung
31	chr9:16809600-16810400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:16809600-16810400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:16809600-16810600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:16809600-16810600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr9:16809600-16810600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr9:16809600-16810800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:16809800-16811600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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