Variant report

Variant	rs4961760
Chromosome Location	chr9:16789878-16789879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10810632	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.98[EUR][1000 genomes]
rs10962602	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17743593	0.85[CEU][hapmap]
rs2026803	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2243614	1.00[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2243719	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2254193	1.00[CEU][hapmap];0.91[MEX][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2254468	1.00[CEU][hapmap];0.81[GIH][hapmap];0.82[AMR][1000 genomes]
rs2812002	0.82[AMR][1000 genomes]
rs3927535	0.82[MEX][hapmap]
rs4961496	0.96[GIH][hapmap];0.81[TSI][hapmap]
rs6475082	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs6475083	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7860932	0.91[MEX][hapmap]
rs9407777	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16767600-16795400	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:16768000-16795000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:16769800-16795400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:16773000-16795000	Weak transcription	HSMMtube	muscle
5	chr9:16784400-16802200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:16785000-16792200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:16785200-16794600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:16786000-16795600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:16787000-16792400	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:16787000-16794600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:16787000-16795200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:16787200-16794800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:16787200-16797600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:16787600-16792200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:16787600-16792600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:16787600-16795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:16788000-16795000	Weak transcription	Fetal Stomach	stomach
18	chr9:16788200-16790200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:16788200-16791800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:16788200-16792000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:16788200-16792200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:16788200-16794400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:16788200-16794600	Weak transcription	NHDF-Ad	bronchial
24	chr9:16788200-16794800	Weak transcription	HSMM	muscle
25	chr9:16788200-16795000	Weak transcription	NHLF	lung
26	chr9:16788200-16798000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:16788400-16791800	Weak transcription	Ovary	ovary
28	chr9:16789000-16794200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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