Variant report

Variant	rs17744912
Chromosome Location	chr10:22010260-22010261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21814516..21816347-chr10:22008760..22011406,3	MCF-7	breast:
2	chr10:21815711..21818489-chr10:22009525..22012289,2	MCF-7	breast:
3	chr10:22008261..22010475-chr10:22011835..22013721,3	K562	blood:
4	chr10:22008975..22011385-chr10:22011817..22013721,2	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11012736	1.00[YRI][hapmap]
rs12243793	1.00[CHD][hapmap]
rs1510994	1.00[CHD][hapmap]
rs2183270	1.00[CHD][hapmap]
rs7916788	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv3374002	chr10:22005580-22026097	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21976800-22013000	Weak transcription	HSMMtube	muscle
2	chr10:21984000-22012400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:21984800-22022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:21989400-22013000	Weak transcription	Fetal Brain Male	brain
5	chr10:21990200-22012800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:21992600-22013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:21994600-22013200	Weak transcription	Thymus	Thymus
8	chr10:21994800-22013400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:21994800-22015800	Weak transcription	Gastric	stomach
10	chr10:21994800-22016200	Weak transcription	Pancreas	Pancrea
11	chr10:21995000-22012400	Weak transcription	Brain Germinal Matrix	brain
12	chr10:21995000-22013200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:21995000-22022600	Weak transcription	Spleen	Spleen
14	chr10:21996000-22013200	Weak transcription	Small Intestine	intestine
15	chr10:21998000-22013200	Weak transcription	Hela-S3	cervix
16	chr10:22000800-22022800	Weak transcription	Aorta	Aorta
17	chr10:22001600-22021200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:22002200-22013200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:22002400-22027600	Weak transcription	Psoas Muscle	Psoas
20	chr10:22003000-22013200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:22003000-22027400	Weak transcription	Colonic Mucosa	Colon
22	chr10:22003600-22013200	Weak transcription	Fetal Brain Female	brain
23	chr10:22003800-22013000	Weak transcription	Ovary	ovary
24	chr10:22003800-22019800	Weak transcription	Lung	lung
25	chr10:22004200-22012800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:22004200-22022800	Weak transcription	Esophagus	oesophagus
27	chr10:22004200-22022800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:22004400-22013000	Weak transcription	Primary T cells from cord blood	blood
29	chr10:22004600-22012800	Weak transcription	Osteobl	bone
30	chr10:22004600-22013600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:22004800-22013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:22004800-22013200	Weak transcription	Brain Substantia Nigra	brain
33	chr10:22004800-22014200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:22005000-22012600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:22005000-22013000	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:22005000-22013000	Weak transcription	HUVEC	blood vessel
37	chr10:22005000-22013000	Weak transcription	NH-A	brain
38	chr10:22005000-22013200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:22005000-22013200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:22005000-22013200	Weak transcription	Brain Angular Gyrus	brain
41	chr10:22005000-22013200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr10:22005000-22013200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr10:22005000-22013200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:22005000-22013400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:22005000-22015600	Weak transcription	Primary B cells from cord blood	blood
46	chr10:22005000-22015600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:22005000-22016600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:22005000-22024200	Weak transcription	Right Ventricle	heart
49	chr10:22005200-22012400	Weak transcription	Fetal Kidney	kidney
50	chr10:22005200-22013000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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