Variant report

Variant	rs12243793
Chromosome Location	chr10:22169568-22169569
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10082414	1.00[MEX][hapmap]
rs10430588	1.00[CHD][hapmap]
rs11012793	1.00[MEX][hapmap]
rs11012809	1.00[MEX][hapmap]
rs11012831	1.00[MEX][hapmap]
rs11012837	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs12255951	1.00[MEX][hapmap]
rs12771210	1.00[CHD][hapmap]
rs1510994	1.00[CHD][hapmap]
rs17744912	1.00[CHD][hapmap]
rs2807976	1.00[MEX][hapmap]
rs7076216	1.00[MEX][hapmap]
rs7916788	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22124200-22169800	Weak transcription	Right Ventricle	heart
2	chr10:22140800-22169800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22140800-22174800	Weak transcription	HSMM	muscle
4	chr10:22149600-22180200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:22153000-22169800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:22153000-22200600	Weak transcription	Osteobl	bone
7	chr10:22155400-22169800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:22156800-22172000	Weak transcription	Fetal Brain Male	brain
9	chr10:22158000-22169800	Weak transcription	Primary T cells from cord blood	blood
10	chr10:22160200-22169800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:22160400-22178600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:22160400-22195600	Weak transcription	NHEK	skin
13	chr10:22160600-22170000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:22160600-22173600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:22161400-22207600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:22161600-22169800	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:22162200-22173600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:22162200-22178000	Weak transcription	Pancreas	Pancrea
19	chr10:22162200-22201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:22162400-22170600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:22162400-22174400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:22162400-22177600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr10:22162600-22170000	Weak transcription	A549	lung
24	chr10:22162600-22173200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:22162600-22173600	Weak transcription	Psoas Muscle	Psoas
26	chr10:22162800-22169600	Weak transcription	Primary B cells from cord blood	blood
27	chr10:22162800-22172600	Weak transcription	Brain Angular Gyrus	brain
28	chr10:22163000-22169800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:22163000-22172200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:22163000-22172200	Weak transcription	Thymus	Thymus
31	chr10:22163000-22188000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:22163200-22182200	Weak transcription	Placenta	Placenta
33	chr10:22163400-22169800	Weak transcription	Fetal Lung	lung
34	chr10:22163400-22169800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:22163400-22173400	Weak transcription	Brain Anterior Caudate	brain
36	chr10:22163400-22178000	Weak transcription	Fetal Stomach	stomach
37	chr10:22163400-22178000	Weak transcription	Fetal Thymus	thymus
38	chr10:22163400-22191200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:22163600-22169800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:22163600-22173800	Weak transcription	Fetal Intestine Large	intestine
41	chr10:22164200-22171400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:22164200-22171800	Weak transcription	Gastric	stomach
43	chr10:22164200-22172600	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:22164400-22169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:22164400-22169800	Weak transcription	Ovary	ovary
46	chr10:22164400-22172000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:22164400-22184800	Weak transcription	Spleen	Spleen
48	chr10:22164400-22186400	Weak transcription	Esophagus	oesophagus
49	chr10:22164600-22170200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:22164600-22177600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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