Variant report

Variant	rs11012809
Chromosome Location	chr10:22160986-22160987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10082414	0.89[ASW][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs11012785	1.00[AMR][1000 genomes]
rs11012793	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[AMR][1000 genomes]
rs11012810	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11012831	1.00[MEX][hapmap]
rs11012837	1.00[MEX][hapmap]
rs11498366	0.87[AMR][1000 genomes]
rs12243793	1.00[MEX][hapmap]
rs12255951	1.00[MEX][hapmap]
rs12257068	0.87[AMR][1000 genomes]
rs16921884	1.00[EUR][1000 genomes]
rs16921910	1.00[EUR][1000 genomes]
rs2807976	1.00[MEX][hapmap]
rs6482192	1.00[AMR][1000 genomes]
rs7076216	1.00[MEX][hapmap]
rs7098147	0.89[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3693050	chr10:22154208-22160986	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22124200-22169800	Weak transcription	Right Ventricle	heart
2	chr10:22124400-22163000	Weak transcription	Ovary	ovary
3	chr10:22126200-22161800	Weak transcription	Left Ventricle	heart
4	chr10:22126600-22161800	Weak transcription	Pancreas	Pancrea
5	chr10:22133400-22161000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:22138000-22161400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:22139000-22161200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:22139200-22161200	Weak transcription	Fetal Lung	lung
9	chr10:22140800-22169800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:22140800-22174800	Weak transcription	HSMM	muscle
11	chr10:22142200-22161200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:22148600-22161600	Weak transcription	K562	blood
13	chr10:22149600-22180200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:22152200-22161000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:22153000-22169800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:22153000-22200600	Weak transcription	Osteobl	bone
17	chr10:22153200-22161000	Weak transcription	Fetal Stomach	stomach
18	chr10:22155400-22169800	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:22156000-22161000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:22156400-22164000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:22156600-22161200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:22156600-22161200	Weak transcription	Liver	Liver
23	chr10:22156600-22163000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:22156800-22161800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:22156800-22168000	Weak transcription	Adipose Nuclei	Adipose
26	chr10:22156800-22172000	Weak transcription	Fetal Brain Male	brain
27	chr10:22157200-22161200	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:22158000-22169800	Weak transcription	Primary T cells from cord blood	blood
29	chr10:22158600-22162600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:22159200-22161200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:22159400-22163000	Weak transcription	Esophagus	oesophagus
32	chr10:22159400-22164200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:22159400-22164600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr10:22159600-22161400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr10:22159800-22161200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:22160000-22163400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:22160200-22161200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr10:22160200-22162000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:22160200-22169800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:22160400-22161200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:22160400-22178600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:22160400-22195600	Weak transcription	NHEK	skin
43	chr10:22160600-22164000	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr10:22160600-22170000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:22160600-22173600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:22160800-22161000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:22160800-22162400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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