Variant report

Variant	rs12255951
Chromosome Location	chr10:22333063-22333064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10082414	1.00[MEX][hapmap]
rs11012809	1.00[MEX][hapmap]
rs11012831	1.00[MEX][hapmap]
rs11012837	1.00[MEX][hapmap]
rs11012899	1.00[MEX][hapmap]
rs12243793	1.00[MEX][hapmap]
rs12249835	1.00[AMR][1000 genomes]
rs12257248	1.00[AMR][1000 genomes]
rs12262849	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265005	1.00[AMR][1000 genomes]
rs2807976	1.00[MEX][hapmap]
rs56379580	1.00[AMR][1000 genomes]
rs7076216	1.00[MEX][hapmap]
rs7090197	1.00[MEX][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22332600-22337800	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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