Variant report

Variant	rs7076216
Chromosome Location	chr10:22165701-22165702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10082414	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11012793	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11012809	1.00[MEX][hapmap]
rs11012810	1.00[ASN][1000 genomes]
rs11012831	1.00[MEX][hapmap]
rs11012837	1.00[MEX][hapmap]
rs11498366	1.00[EUR][1000 genomes]
rs11498370	1.00[ASN][1000 genomes]
rs12098405	1.00[ASN][1000 genomes]
rs12243793	1.00[MEX][hapmap]
rs12255951	1.00[MEX][hapmap]
rs12257068	1.00[EUR][1000 genomes]
rs12265097	1.00[TSI][hapmap]
rs2807976	1.00[MEX][hapmap]
rs6482192	1.00[EUR][1000 genomes]
rs7083501	1.00[ASN][1000 genomes]
rs7097664	1.00[ASN][1000 genomes]
rs7098147	1.00[TSI][hapmap]
rs7893818	1.00[ASN][1000 genomes]
rs7901657	1.00[ASN][1000 genomes]
rs7919823	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22124200-22169800	Weak transcription	Right Ventricle	heart
2	chr10:22140800-22169800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22140800-22174800	Weak transcription	HSMM	muscle
4	chr10:22149600-22180200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:22153000-22169800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:22153000-22200600	Weak transcription	Osteobl	bone
7	chr10:22155400-22169800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:22156800-22168000	Weak transcription	Adipose Nuclei	Adipose
9	chr10:22156800-22172000	Weak transcription	Fetal Brain Male	brain
10	chr10:22158000-22169800	Weak transcription	Primary T cells from cord blood	blood
11	chr10:22160200-22169800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:22160400-22178600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:22160400-22195600	Weak transcription	NHEK	skin
14	chr10:22160600-22170000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:22160600-22173600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:22161400-22207600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:22161600-22169800	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:22162200-22173600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:22162200-22178000	Weak transcription	Pancreas	Pancrea
20	chr10:22162200-22201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:22162400-22170600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:22162400-22174400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:22162400-22177600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:22162600-22170000	Weak transcription	A549	lung
25	chr10:22162600-22173200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:22162600-22173600	Weak transcription	Psoas Muscle	Psoas
27	chr10:22162800-22169600	Weak transcription	Primary B cells from cord blood	blood
28	chr10:22162800-22172600	Weak transcription	Brain Angular Gyrus	brain
29	chr10:22163000-22169800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:22163000-22172200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:22163000-22172200	Weak transcription	Thymus	Thymus
32	chr10:22163000-22188000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:22163200-22165800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:22163200-22168800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:22163200-22169200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:22163200-22182200	Weak transcription	Placenta	Placenta
37	chr10:22163400-22166200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:22163400-22168000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:22163400-22168000	Weak transcription	Left Ventricle	heart
40	chr10:22163400-22168600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:22163400-22168800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr10:22163400-22169800	Weak transcription	Fetal Lung	lung
43	chr10:22163400-22169800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr10:22163400-22173400	Weak transcription	Brain Anterior Caudate	brain
45	chr10:22163400-22178000	Weak transcription	Fetal Stomach	stomach
46	chr10:22163400-22178000	Weak transcription	Fetal Thymus	thymus
47	chr10:22163400-22191200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:22163600-22169800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:22163600-22173800	Weak transcription	Fetal Intestine Large	intestine
50	chr10:22163800-22168000	Weak transcription	GM12878-XiMat	blood

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