Variant report

Variant	rs12098405
Chromosome Location	chr10:22225569-22225570
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11012810	1.00[ASN][1000 genomes]
rs11498370	1.00[ASN][1000 genomes]
rs1926694	1.00[ASN][1000 genomes]
rs1926695	1.00[ASN][1000 genomes]
rs57514919	0.86[EUR][1000 genomes]
rs57727726	0.86[EUR][1000 genomes]
rs7076216	1.00[ASN][1000 genomes]
rs7094231	0.95[EUR][1000 genomes]
rs7096530	0.95[EUR][1000 genomes]
rs7893818	1.00[ASN][1000 genomes]
rs7916536	0.86[EUR][1000 genomes]
rs7919823	1.00[ASN][1000 genomes]
rs7923514	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1048924	chr10:22177164-22296409	Enhancers Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv894948	chr10:22203392-22255097	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv947596	chr10:22219973-22227016	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1795981	chr10:22223984-22253054	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22188800-22229200	Weak transcription	Aorta	Aorta
2	chr10:22199600-22250800	Weak transcription	Pancreas	Pancrea
3	chr10:22215600-22228600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:22222000-22228800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:22223400-22226400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr10:22225200-22225600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:22225200-22227800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:22225200-22228800	Weak transcription	Liver	Liver
9	chr10:22225200-22232200	Weak transcription	K562	blood
10	chr10:22225200-22232400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:22225200-22236800	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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