Variant report

Variant	rs17745564
Chromosome Location	chr11:85855635-85855636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85843188..85845869-chr11:85853457..85855853,3	K562	blood:
2	chr11:85843188..85847457-chr11:85851977..85855853,7	K562	blood:
3	chr11:85853396..85856264-chr11:85887002..85888744,3	K562	blood:
4	chr11:85849556..85851508-chr11:85853899..85856057,2	K562	blood:
5	chr11:85854757..85856923-chr11:85869692..85871194,2	K562	blood:
6	chr11:85777613..85779619-chr11:85854927..85856671,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10501605	1.00[YRI][hapmap]
rs10501611	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12294130	1.00[CHD][hapmap]
rs17745105	1.00[YRI][hapmap]
rs17745153	1.00[YRI][hapmap]
rs17745236	1.00[YRI][hapmap]
rs17745273	1.00[YRI][hapmap]
rs17817690	1.00[YRI][hapmap]
rs17817859	1.00[YRI][hapmap]
rs17817956	1.00[YRI][hapmap]
rs3889743	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4943937	1.00[YRI][hapmap]
rs4944550	1.00[YRI][hapmap]
rs4944551	1.00[YRI][hapmap]
rs56084917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56371467	1.00[EUR][1000 genomes]
rs56411296	0.86[EUR][1000 genomes]
rs7943152	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85845200-85858600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:85845800-85859800	Weak transcription	Aorta	Aorta
3	chr11:85846400-85862200	Weak transcription	Psoas Muscle	Psoas
4	chr11:85848000-85861200	Weak transcription	Small Intestine	intestine
5	chr11:85848000-85861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:85849000-85858600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:85849200-85856000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr11:85849200-85857200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:85849400-85856200	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:85850400-85862600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:85850600-85856800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:85852600-85859200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:85852800-85862200	Weak transcription	Right Atrium	heart
14	chr11:85853000-85856400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr11:85853200-85859800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:85853200-85860200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:85853200-85860600	Weak transcription	Osteobl	bone
18	chr11:85853400-85855800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr11:85853600-85855800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr11:85853800-85856600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr11:85854000-85856000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:85854000-85856000	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr11:85854200-85856000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:85854200-85856600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:85854400-85856000	Enhancers	GM12878-XiMat	blood
26	chr11:85854400-85856200	Enhancers	Fetal Kidney	kidney
27	chr11:85854400-85856600	Enhancers	Fetal Lung	lung
28	chr11:85854400-85862800	Weak transcription	Primary B cells from cord blood	blood
29	chr11:85854600-85857400	Enhancers	Duodenum Mucosa	Duodenum
30	chr11:85854800-85856800	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr11:85854800-85857000	Enhancers	Brain Substantia Nigra	brain
32	chr11:85854800-85857400	Enhancers	Fetal Intestine Small	intestine
33	chr11:85854800-85862600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:85855000-85856800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:85855000-85861800	Weak transcription	Adipose Nuclei	Adipose
36	chr11:85855000-85862000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:85855200-85858000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr11:85855400-85856200	Enhancers	Liver	Liver
39	chr11:85855400-85856600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr11:85855400-85856800	Enhancers	Brain Angular Gyrus	brain
41	chr11:85855400-85857000	Enhancers	Brain Hippocampus Middle	brain
42	chr11:85855400-85857200	Enhancers	Fetal Intestine Large	intestine
43	chr11:85855600-85856800	Enhancers	Brain Cingulate Gyrus	brain
44	chr11:85855600-85856800	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr11:85855600-85857000	Enhancers	Stomach Mucosa	stomach
46	chr11:85855600-85857800	Enhancers	K562	blood

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