Variant report

Variant	rs56411296
Chromosome Location	chr11:85864387-85864388
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85779554..85782905-chr11:85860304..85865248,6	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10501611	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17745564	0.86[EUR][1000 genomes]
rs3889743	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56084917	0.86[EUR][1000 genomes]
rs56371467	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85861000-85864600	Enhancers	Fetal Lung	lung
2	chr11:85861200-85864400	Enhancers	Fetal Intestine Large	intestine
3	chr11:85861400-85865200	Enhancers	Liver	Liver
4	chr11:85861600-85864400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:85861800-85864800	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:85861800-85865200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:85862000-85864800	Enhancers	Fetal Kidney	kidney
8	chr11:85862000-85865200	Enhancers	Fetal Intestine Small	intestine
9	chr11:85862200-85864400	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:85862200-85864800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr11:85862400-85865200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:85862600-85864400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr11:85862600-85867400	Weak transcription	Pancreas	Pancrea
14	chr11:85862800-85864400	Enhancers	HMEC	breast
15	chr11:85863000-85867600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:85863400-85864400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:85863400-85865000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:85863400-85865000	Enhancers	Brain Hippocampus Middle	brain
19	chr11:85863400-85865000	Enhancers	K562	blood
20	chr11:85863400-85866400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:85863400-85867400	Weak transcription	Spleen	Spleen
22	chr11:85863400-85870400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:85863400-85870600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:85863400-85872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:85863400-85873000	Weak transcription	Lung	lung
26	chr11:85863600-85864600	Enhancers	Brain Substantia Nigra	brain
27	chr11:85863600-85864800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:85863600-85864800	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr11:85863600-85866600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:85863600-85867000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:85863600-85867000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:85863600-85867400	Weak transcription	Left Ventricle	heart
33	chr11:85863600-85867400	Weak transcription	Right Atrium	heart
34	chr11:85863600-85867400	Weak transcription	Right Ventricle	heart
35	chr11:85863600-85869400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:85863600-85869600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr11:85863600-85871200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:85863800-85864400	Enhancers	Brain Anterior Caudate	brain
39	chr11:85863800-85864600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:85863800-85865400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:85863800-85865400	Weak transcription	Fetal Thymus	thymus
42	chr11:85863800-85866400	Weak transcription	Ovary	ovary
43	chr11:85863800-85867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:85863800-85867400	Weak transcription	Placenta	Placenta
45	chr11:85863800-85867400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:85863800-85871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:85864000-85864600	Enhancers	Small Intestine	intestine
48	chr11:85864000-85867200	Weak transcription	Adipose Nuclei	Adipose
49	chr11:85864000-85867400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:85864000-85868800	Weak transcription	Hela-S3	cervix

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