Variant report

Variant	rs17747468
Chromosome Location	chr2:180352334-180352335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11686902	1.00[ASN][1000 genomes]
rs12151810	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400823	1.00[ASN][1000 genomes]
rs17454652	1.00[ASN][1000 genomes]
rs1878590	1.00[ASN][1000 genomes]
rs34179089	1.00[ASN][1000 genomes]
rs34620164	1.00[ASN][1000 genomes]
rs34752547	1.00[ASN][1000 genomes]
rs34870153	1.00[ASN][1000 genomes]
rs35338206	1.00[ASN][1000 genomes]
rs35361678	1.00[ASN][1000 genomes]
rs62641574	1.00[ASN][1000 genomes]
rs7580666	1.00[ASN][1000 genomes]
rs7581296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180332800-180352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180349600-180353000	Enhancers	Fetal Heart	heart
3	chr2:180350200-180357800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180350400-180352600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr2:180350400-180355200	Weak transcription	Right Atrium	heart
6	chr2:180350600-180367200	Weak transcription	Liver	Liver
7	chr2:180351400-180352400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:180351400-180352600	Enhancers	Fetal Intestine Large	intestine
9	chr2:180351400-180352600	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr2:180351800-180352400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr2:180351800-180352600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:180351800-180352600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:180352000-180352400	Enhancers	Duodenum Mucosa	Duodenum
14	chr2:180352000-180352400	Enhancers	Psoas Muscle	Psoas
15	chr2:180352200-180352400	Enhancers	Gastric	stomach
16	chr2:180352200-180352800	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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