Variant report

Variant	rs34752547
Chromosome Location	chr2:180364865-180364866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11686902	1.00[ASN][1000 genomes]
rs12151810	1.00[ASN][1000 genomes]
rs1400823	1.00[ASN][1000 genomes]
rs17454652	1.00[ASN][1000 genomes]
rs17747468	1.00[ASN][1000 genomes]
rs1878590	1.00[ASN][1000 genomes]
rs34179089	1.00[ASN][1000 genomes]
rs34620164	1.00[ASN][1000 genomes]
rs34870153	1.00[ASN][1000 genomes]
rs35338206	1.00[ASN][1000 genomes]
rs35361678	1.00[ASN][1000 genomes]
rs62641574	1.00[ASN][1000 genomes]
rs7580666	1.00[ASN][1000 genomes]
rs7581296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180350600-180367200	Weak transcription	Liver	Liver
2	chr2:180352800-180378400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:180358400-180367800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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