Variant report

Variant	rs1774905
Chromosome Location	chr1:57450300-57450301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1342435	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1411013	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1411014	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418473	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418475	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17409911	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1774888	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1774910	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2251154	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs515493	0.82[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs526259	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs630417	0.92[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.90[ASN][1000 genomes]
rs661586	0.91[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs689342	0.91[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72641113	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs947655	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57440400-57452600	Weak transcription	Liver	Liver
2	chr1:57449200-57451200	Weak transcription	HepG2	liver
3	chr1:57449800-57451400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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