Variant report

Variant	rs526259
Chromosome Location	chr1:57459390-57459391
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1342435	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411013	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1411014	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1418473	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1418475	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17409911	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774888	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774905	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1774910	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2251154	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs515493	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs630417	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs661586	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs689342	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72641113	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947655	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428752	chr1:57455083-57605082	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57457400-57462400	Weak transcription	Fetal Intestine Large	intestine
2	chr1:57457800-57480400	Weak transcription	Fetal Intestine Small	intestine
3	chr1:57458400-57460400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:57458400-57466600	Weak transcription	Psoas Muscle	Psoas
5	chr1:57458600-57459600	Weak transcription	Fetal Kidney	kidney
6	chr1:57458800-57459400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:57458800-57459600	Enhancers	Brain Germinal Matrix	brain
8	chr1:57458800-57459600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:57459000-57459400	Enhancers	Ovary	ovary
10	chr1:57459000-57474600	Weak transcription	Fetal Brain Female	brain
11	chr1:57459200-57459800	Enhancers	Liver	Liver
12	chr1:57459200-57459800	Enhancers	HepG2	liver
13	chr1:57459200-57460200	Weak transcription	Aorta	Aorta
14	chr1:57459200-57460400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:57459200-57460400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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