Variant report

Variant	rs17751773
Chromosome Location	chr8:2060960-2060961
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11136467	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17684547	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17751791	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1866718	0.95[ASN][1000 genomes]
rs34053376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35528480	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3779830	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58102747	0.95[ASN][1000 genomes]
rs60680720	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2023600-2067000	Weak transcription	Right Atrium	heart
2	chr8:2034600-2074200	Weak transcription	Fetal Heart	heart
3	chr8:2035000-2075000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:2049800-2061800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:2050000-2070000	Weak transcription	Psoas Muscle	Psoas
6	chr8:2053400-2074000	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:2053800-2062200	Strong transcription	Left Ventricle	heart
8	chr8:2054400-2061000	Strong transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:2057600-2066400	Weak transcription	Fetal Kidney	kidney
10	chr8:2057800-2063400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:2058200-2065600	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:2059400-2062600	Enhancers	Fetal Thymus	thymus
13	chr8:2060000-2061400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr8:2060200-2061800	Weak transcription	Primary B cells from cord blood	blood
15	chr8:2060800-2061600	ZNF genes & repeats	Spleen	Spleen
16	chr8:2060800-2062000	Strong transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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