Variant report

Variant	rs58102747
Chromosome Location	chr8:2062409-2062410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17751773	0.95[ASN][1000 genomes]
rs1866718	1.00[ASN][1000 genomes]
rs2280901	1.00[AMR][1000 genomes]
rs2280906	1.00[AMR][1000 genomes]
rs2280907	1.00[AMR][1000 genomes]
rs2280908	1.00[AMR][1000 genomes]
rs2280909	1.00[AMR][1000 genomes]
rs2280910	1.00[AMR][1000 genomes]
rs34053376	0.95[ASN][1000 genomes]
rs3736654	1.00[AMR][1000 genomes]
rs3736655	1.00[AMR][1000 genomes]
rs3736656	1.00[AMR][1000 genomes]
rs3736657	1.00[AMR][1000 genomes]
rs3736660	1.00[AMR][1000 genomes]
rs3779830	0.95[ASN][1000 genomes]
rs60680720	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2023600-2067000	Weak transcription	Right Atrium	heart
2	chr8:2034600-2074200	Weak transcription	Fetal Heart	heart
3	chr8:2035000-2075000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:2050000-2070000	Weak transcription	Psoas Muscle	Psoas
5	chr8:2053400-2074000	Strong transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:2057600-2066400	Weak transcription	Fetal Kidney	kidney
7	chr8:2057800-2063400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:2058200-2065600	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:2059400-2062600	Enhancers	Fetal Thymus	thymus
10	chr8:2061800-2069400	Strong transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:2062000-2065600	Weak transcription	Right Ventricle	heart
12	chr8:2062200-2063000	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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