Variant report

Variant	rs17752353
Chromosome Location	chr10:26481025-26481026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26480268..26482287-chr10:26522868..26525834,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508711	0.88[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10508712	0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764599	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10828949	0.81[CEU][hapmap]
rs10828950	0.88[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs10828951	0.88[CEU][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10828954	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828957	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828958	0.90[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828961	0.98[ASN][1000 genomes]
rs10828962	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11014917	0.80[CEU][hapmap]
rs11014930	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs11014953	0.87[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs11014954	0.83[EUR][1000 genomes]
rs11014955	0.88[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs11014960	0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014983	0.87[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11599503	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12219979	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12269307	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12573019	0.80[CEU][hapmap]
rs12764197	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12773851	0.83[EUR][1000 genomes]
rs12775931	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12779517	0.82[EUR][1000 genomes]
rs12781541	0.87[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1339811	0.80[CEU][hapmap]
rs1361713	0.88[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17752077	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1935483	0.87[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1996715	0.81[CEU][hapmap]
rs2000255	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2051084	0.92[ASN][1000 genomes]
rs2275727	0.88[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2887177	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34240977	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34966498	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3737316	0.87[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3817416	0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3818957	0.87[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4526683	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747546	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4749092	0.87[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749094	0.87[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4749098	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482535	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7083144	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7083433	0.87[ASN][1000 genomes]
rs7905083	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7908081	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915636	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26474000-26491000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26478400-26483000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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