Variant report

Variant	rs12573019
Chromosome Location	chr10:26314305-26314306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10508711	0.94[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10508712	0.94[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10828939	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828941	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828944	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828949	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828950	0.94[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10828951	0.94[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10828954	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10828957	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10828958	0.81[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs11014861	0.81[ASN][1000 genomes]
rs11014917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014919	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014930	1.00[CEU][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11014953	0.94[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014954	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014955	0.94[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014960	0.94[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11014983	0.94[CEU][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11527599	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11599503	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12219979	0.87[EUR][1000 genomes]
rs12269307	0.87[CEU][hapmap]
rs12571378	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12764197	0.82[TSI][hapmap]
rs12773851	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12774203	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12775931	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12779517	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12781541	0.94[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1339811	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1339819	0.87[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1361713	0.94[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs17752077	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17752353	0.80[CEU][hapmap]
rs1935483	0.94[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1996715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2000255	0.82[EUR][1000 genomes]
rs2176938	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275727	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28796333	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2887177	0.85[EUR][1000 genomes]
rs34992226	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3737316	0.94[CEU][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs3817416	0.94[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3818957	0.94[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3824706	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4526683	0.88[CEU][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap]
rs4749086	0.81[ASN][1000 genomes]
rs4749090	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4749092	0.94[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4749094	0.94[CEU][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs4749098	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs6482535	0.88[CEU][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs71499375	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7915636	0.87[CEU][hapmap];0.82[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs9787562	0.87[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26306200-26314600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:26310600-26314600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:26313400-26320200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:26313600-26314400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:26313600-26315200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:26313600-26315400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:26313800-26315000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:26313800-26315200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:26313800-26315400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:26314000-26315400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:26314200-26315200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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