Variant report

Variant	rs10828944
Chromosome Location	chr10:26349136-26349137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10508711	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10508712	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10828939	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828941	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828949	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828950	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828951	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10828954	0.90[EUR][1000 genomes]
rs10828957	0.90[EUR][1000 genomes]
rs10828958	0.85[EUR][1000 genomes]
rs11014917	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014919	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014930	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014953	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014954	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11014955	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11014960	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11014983	0.87[EUR][1000 genomes]
rs11527599	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11599503	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12219979	0.88[EUR][1000 genomes]
rs12571378	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12573019	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12773851	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12774203	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12775931	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12779517	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12781541	0.90[EUR][1000 genomes]
rs1339811	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1339819	0.83[ASN][1000 genomes]
rs1361713	0.86[EUR][1000 genomes]
rs17752077	0.90[EUR][1000 genomes]
rs1935483	0.90[EUR][1000 genomes]
rs1996715	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2000255	0.83[EUR][1000 genomes]
rs2176938	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275727	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28796333	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2887177	0.86[EUR][1000 genomes]
rs34992226	0.88[ASN][1000 genomes]
rs3737316	0.86[EUR][1000 genomes]
rs3817416	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3818957	0.90[EUR][1000 genomes]
rs3824706	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749090	0.84[ASN][1000 genomes]
rs4749092	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4749094	0.86[EUR][1000 genomes]
rs7083144	0.81[EUR][1000 genomes]
rs71499375	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9787562	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1798878	chr10:26339336-26355576	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
3	esv1803823	chr10:26343356-26352012	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv13963	chr10:26345494-26361303	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26344200-26355800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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