Variant report

Variant	rs11014861
Chromosome Location	chr10:26219334-26219335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:26219304-26219354	HCM	heart:	n/a
2	chr10:26219304-26219354	SK-N-MC	brain:	n/a
3	chr10:26219304-26219354	IMR90	lung:	fetal
4	chr10:26219304-26219354	NHBE	bronchial:	n/a
5	chr10:26219304-26219354	H1-hESC	embryonic stem cell:	embryo
6	chr10:26219304-26219354	HRPEpiC	eye:	n/a
7	chr10:26219304-26219354	CMK	blood:	n/a
8	chr10:26219304-26219354	NB4	blood:	n/a
9	chr10:26219304-26219354	AG09319	gingival:	n/a
10	chr10:26219304-26219354	A549	lung:	n/a
11	chr10:26219304-26219354	GM12878	blood:	n/a
12	chr10:26219304-26219354	T-47D	breast:	n/a
13	chr10:26219304-26219354	HepG2	liver:	n/a
14	chr10:26219304-26219354	U87	brain:	n/a
15	chr10:26219304-26219354	HPAEpiC	pulmonary alveolar:	n/a
16	chr10:26219304-26219354	PANC-1	pancreas:	n/a
17	chr10:26219304-26219354	AG10803	skin:	n/a
18	chr10:26219304-26219354	NT2-D1	testis:	n/a
19	chr10:26219304-26219354	HRE	kidney:	n/a
20	chr10:26219304-26219354	HRCEpiC	kidney:	n/a
21	chr10:26219304-26219354	Caco-2	colon:	n/a
22	chr10:26219304-26219354	AoSMC	blood vessel:	n/a
23	chr10:26219304-26219354	HEK293	kidney:	embryo
24	chr10:26219304-26219354	PFSK-1	brain:	n/a
25	chr10:26219304-26219354	MCF10A-Er-Src	breast:	n/a
26	chr10:26219304-26219354	HL-60	blood:	n/a
27	chr10:26219304-26219354	K562	blood:	n/a
28	chr10:26219304-26219354	HUVEC	blood vessel:	n/a
29	chr10:26219304-26219354	HCF	heart:	n/a
30	chr10:26219304-26219354	GM12891	blood:	n/a
31	chr10:26219304-26219354	GM19239	blood:	n/a
32	chr10:26219304-26219354	AG04449	skin:	fetal
33	chr10:26219304-26219354	GM12892	blood:	n/a
34	chr10:26219304-26219354	HNPCEpiC	eye:	n/a
35	chr10:26219304-26219354	RPTEC	kidney:	n/a
36	chr10:26219304-26219354	BJ	skin:	n/a
37	chr10:26219304-26219354	ovcar-3	ovarian:	n/a
38	chr10:26219304-26219354	Hela-S3	cervix:	n/a
39	chr10:26219304-26219354	SK-N-SH	brain:	n/a
40	chr10:26219304-26219354	Hepatocyte	liver:	n/a
41	chr10:26219304-26219354	GM06990	blood:	n/a
42	chr10:26219304-26219354	NHDF-neo	bronchial:	n/a
43	chr10:26219304-26219354	AG04450	lung:	fetal
44	chr10:26219304-26219354	PrEC	prostate:	n/a
45	chr10:26219304-26219354	HCT-116	colon:	n/a
46	chr10:26219304-26219354	LNCaP	prostate:	n/a
47	chr10:26219304-26219354	SKMC	muscle:	n/a
48	chr10:26219304-26219354	SAEC	small airway:	n/a
49	chr10:26219304-26219354	HCPEpiC	choroid plexus:	n/a
50	chr10:26219304-26219354	HEEpiC	esophagus:	n/a

No data

Variant related genes	Relation type
MYO3A	CpG island

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs1075611	0.86[ASN][1000 genomes]
rs10828939	0.85[ASN][1000 genomes]
rs10828941	0.83[ASN][1000 genomes]
rs11014832	0.92[ASN][1000 genomes]
rs11014837	0.92[ASN][1000 genomes]
rs11014839	0.92[ASN][1000 genomes]
rs11014840	0.93[ASN][1000 genomes]
rs11014841	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11014917	0.81[ASN][1000 genomes]
rs11014919	0.83[ASN][1000 genomes]
rs11014930	0.80[ASN][1000 genomes]
rs11594081	0.92[ASN][1000 genomes]
rs11596244	0.91[ASN][1000 genomes]
rs11596246	0.92[ASN][1000 genomes]
rs11596291	0.92[ASN][1000 genomes]
rs12413819	0.91[ASN][1000 genomes]
rs12415065	0.91[ASN][1000 genomes]
rs12415073	0.91[ASN][1000 genomes]
rs12415076	0.91[ASN][1000 genomes]
rs12571378	0.83[ASN][1000 genomes]
rs12573019	0.81[ASN][1000 genomes]
rs12763779	0.92[ASN][1000 genomes]
rs12764003	0.92[ASN][1000 genomes]
rs12765016	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12765882	0.92[ASN][1000 genomes]
rs12766116	0.92[ASN][1000 genomes]
rs12766438	0.91[ASN][1000 genomes]
rs12766618	0.91[ASN][1000 genomes]
rs12766630	0.89[ASN][1000 genomes]
rs12767158	0.91[ASN][1000 genomes]
rs12770771	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12783838	0.88[ASN][1000 genomes]
rs1339807	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1339811	0.86[ASN][1000 genomes]
rs1339819	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17745419	0.91[ASN][1000 genomes]
rs17745431	0.91[ASN][1000 genomes]
rs17745449	0.91[ASN][1000 genomes]
rs17745497	0.91[ASN][1000 genomes]
rs17745521	0.91[ASN][1000 genomes]
rs17745539	0.91[ASN][1000 genomes]
rs17745639	0.92[ASN][1000 genomes]
rs17813027	0.91[ASN][1000 genomes]
rs17813033	0.91[ASN][1000 genomes]
rs17813057	0.91[ASN][1000 genomes]
rs17813069	0.91[ASN][1000 genomes]
rs17813093	0.91[ASN][1000 genomes]
rs17813099	0.91[ASN][1000 genomes]
rs17813111	0.91[ASN][1000 genomes]
rs17813147	0.91[ASN][1000 genomes]
rs1996715	0.85[ASN][1000 genomes]
rs2014483	0.87[ASN][1000 genomes]
rs2176938	0.83[ASN][1000 genomes]
rs34003574	0.91[ASN][1000 genomes]
rs34041877	0.91[ASN][1000 genomes]
rs34084425	0.90[ASN][1000 genomes]
rs34131502	0.91[ASN][1000 genomes]
rs34233765	0.90[ASN][1000 genomes]
rs34393388	0.91[ASN][1000 genomes]
rs34397260	0.91[ASN][1000 genomes]
rs34482812	0.92[ASN][1000 genomes]
rs34527620	0.83[ASN][1000 genomes]
rs34610428	0.91[ASN][1000 genomes]
rs34613665	0.91[ASN][1000 genomes]
rs34697018	0.91[ASN][1000 genomes]
rs34776712	0.91[ASN][1000 genomes]
rs34828805	0.91[ASN][1000 genomes]
rs34992226	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35291419	0.90[ASN][1000 genomes]
rs35326670	0.91[ASN][1000 genomes]
rs35554988	0.91[ASN][1000 genomes]
rs35773819	0.85[ASN][1000 genomes]
rs35936738	0.91[ASN][1000 genomes]
rs35938978	0.91[ASN][1000 genomes]
rs35972702	0.83[ASN][1000 genomes]
rs3887832	0.87[ASN][1000 genomes]
rs4749086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749090	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61009371	0.91[ASN][1000 genomes]
rs6482518	0.92[ASN][1000 genomes]
rs66751834	0.91[ASN][1000 genomes]
rs67808306	0.91[ASN][1000 genomes]
rs68073810	0.91[ASN][1000 genomes]
rs7083239	0.93[ASN][1000 genomes]
rs71495490	0.91[ASN][1000 genomes]
rs71495491	0.82[ASN][1000 genomes]
rs71499369	0.91[ASN][1000 genomes]
rs71499370	0.91[ASN][1000 genomes]
rs71499375	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs731797	0.87[ASN][1000 genomes]
rs748602	0.91[ASN][1000 genomes]
rs748603	0.85[ASN][1000 genomes]
rs7896978	0.92[ASN][1000 genomes]
rs7897690	0.92[ASN][1000 genomes]
rs7909123	0.92[ASN][1000 genomes]
rs7913600	0.92[ASN][1000 genomes]
rs946689	0.89[ASN][1000 genomes]
rs9787562	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26215400-26222400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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