Variant report

Variant	rs12770771
Chromosome Location	chr10:26185250-26185251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1075611	0.92[ASN][1000 genomes]
rs10828949	0.85[CHB][hapmap]
rs11014832	1.00[ASN][1000 genomes]
rs11014833	0.84[ASN][1000 genomes]
rs11014837	1.00[ASN][1000 genomes]
rs11014839	0.98[ASN][1000 genomes]
rs11014840	0.99[ASN][1000 genomes]
rs11014841	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014861	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11014917	0.86[CHB][hapmap]
rs11014919	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs11594081	0.99[ASN][1000 genomes]
rs11596244	0.98[ASN][1000 genomes]
rs11596246	0.99[ASN][1000 genomes]
rs11596291	0.99[ASN][1000 genomes]
rs12413819	0.98[ASN][1000 genomes]
rs12415065	0.98[ASN][1000 genomes]
rs12415073	0.98[ASN][1000 genomes]
rs12415076	0.98[ASN][1000 genomes]
rs12573019	0.86[CHB][hapmap]
rs12763779	1.00[ASN][1000 genomes]
rs12764003	1.00[ASN][1000 genomes]
rs12765016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765882	1.00[ASN][1000 genomes]
rs12766116	1.00[ASN][1000 genomes]
rs12766157	0.84[ASN][1000 genomes]
rs12766438	0.98[ASN][1000 genomes]
rs12766618	0.98[ASN][1000 genomes]
rs12766630	0.97[ASN][1000 genomes]
rs12767158	0.98[ASN][1000 genomes]
rs12783838	0.95[ASN][1000 genomes]
rs1339807	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339811	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1339819	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs17745419	0.98[ASN][1000 genomes]
rs17745431	0.98[ASN][1000 genomes]
rs17745449	0.98[ASN][1000 genomes]
rs17745497	0.98[ASN][1000 genomes]
rs17745521	0.98[ASN][1000 genomes]
rs17745539	0.98[ASN][1000 genomes]
rs17745639	1.00[ASN][1000 genomes]
rs17813027	0.98[ASN][1000 genomes]
rs17813033	0.98[ASN][1000 genomes]
rs17813057	0.98[ASN][1000 genomes]
rs17813069	0.98[ASN][1000 genomes]
rs17813093	0.98[ASN][1000 genomes]
rs17813099	0.98[ASN][1000 genomes]
rs17813111	0.98[ASN][1000 genomes]
rs17813147	0.98[ASN][1000 genomes]
rs1996715	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs2014483	0.95[ASN][1000 genomes]
rs34003574	0.98[ASN][1000 genomes]
rs34041877	0.98[ASN][1000 genomes]
rs34084425	0.98[ASN][1000 genomes]
rs34131502	0.98[ASN][1000 genomes]
rs34233765	0.98[ASN][1000 genomes]
rs34393388	0.98[ASN][1000 genomes]
rs34397260	0.98[ASN][1000 genomes]
rs34482812	1.00[ASN][1000 genomes]
rs34527620	0.90[ASN][1000 genomes]
rs34610428	0.98[ASN][1000 genomes]
rs34613665	0.98[ASN][1000 genomes]
rs34697018	0.98[ASN][1000 genomes]
rs34776712	0.98[ASN][1000 genomes]
rs34828805	0.98[ASN][1000 genomes]
rs34992226	0.82[ASN][1000 genomes]
rs35291419	0.98[ASN][1000 genomes]
rs35326670	0.98[ASN][1000 genomes]
rs35554988	0.98[ASN][1000 genomes]
rs35773819	0.92[ASN][1000 genomes]
rs35936738	0.98[ASN][1000 genomes]
rs35938978	0.98[ASN][1000 genomes]
rs35972702	0.90[ASN][1000 genomes]
rs3887832	0.93[ASN][1000 genomes]
rs4749086	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4749090	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs61009371	0.98[ASN][1000 genomes]
rs6482518	1.00[ASN][1000 genomes]
rs66751834	0.98[ASN][1000 genomes]
rs67808306	0.98[ASN][1000 genomes]
rs68073810	0.98[ASN][1000 genomes]
rs7083239	0.99[ASN][1000 genomes]
rs71495490	0.98[ASN][1000 genomes]
rs71495491	0.89[ASN][1000 genomes]
rs71499369	0.98[ASN][1000 genomes]
rs71499370	0.98[ASN][1000 genomes]
rs731797	0.93[ASN][1000 genomes]
rs748602	0.98[ASN][1000 genomes]
rs748603	0.92[ASN][1000 genomes]
rs7896978	1.00[ASN][1000 genomes]
rs7897690	1.00[ASN][1000 genomes]
rs7909123	1.00[ASN][1000 genomes]
rs7913600	1.00[ASN][1000 genomes]
rs946689	0.97[ASN][1000 genomes]
rs9787562	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26181000-26185600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:26184600-26186000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:26184600-26186400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:26184600-26186600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:26184800-26185600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:26184800-26186400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:26185000-26186800	Enhancers	Brain Germinal Matrix	brain
8	chr10:26185200-26185800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:26185200-26185800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:26185200-26186000	Enhancers	HUES64 Cell Line	embryonic stem cell

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