Variant report

Variant	rs1775246
Chromosome Location	chr10:26781388-26781389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1625594	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775247	0.96[ASN][1000 genomes]
rs786870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786871	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs943875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26769400-26792800	Weak transcription	Spleen	Spleen
2	chr10:26769400-26797000	Weak transcription	Pancreas	Pancrea
3	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:26774200-26789200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:26776600-26789800	Weak transcription	Lung	lung
8	chr10:26776600-26820200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:26776800-26781600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:26778000-26781600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:26778000-26793400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:26778400-26782200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:26779600-26788000	Strong transcription	Fetal Thymus	thymus
14	chr10:26779800-26781400	Enhancers	Adipose Nuclei	Adipose
15	chr10:26780000-26784200	Strong transcription	Thymus	Thymus
16	chr10:26780200-26781400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:26780200-26781400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:26780200-26834000	Strong transcription	Dnd41	blood
19	chr10:26780400-26805800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:26780600-26781600	Enhancers	A549	lung
22	chr10:26780800-26781400	ZNF genes & repeats	GM12878-XiMat	blood
23	chr10:26780800-26781400	Enhancers	Hela-S3	cervix
24	chr10:26780800-26783000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:26780800-26784200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:26781000-26783400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:26781000-26783600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:26781000-26784800	Strong transcription	Primary T cells from cord blood	blood
30	chr10:26781000-26796000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:26781000-26796200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:26781000-26796600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:26781000-26814000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:26781200-26781400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:26781200-26781400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:26781200-26781400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:26781200-26781600	Weak transcription	Liver	Liver
39	chr10:26781200-26781600	Genic enhancers	Monocytes-CD14+_RO01746	blood
40	chr10:26781200-26781800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
41	chr10:26781200-26784200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:26781200-26785400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:26781200-26798000	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr10:26781200-26800600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:26781200-26808000	Strong transcription	Primary B cells from cord blood	blood

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