Variant report

Variant	rs786871
Chromosome Location	chr10:26765474-26765475
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26764462..26766548-chr10:26772607..26774212,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1625594	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1775246	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1775247	0.84[ASN][1000 genomes]
rs786870	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs943875	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26756600-26768000	Enhancers	Primary T cells fromperipheralblood	blood
2	chr10:26757800-26768800	Weak transcription	Liver	Liver
3	chr10:26758000-26768600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:26758000-26768800	Weak transcription	Pancreas	Pancrea
5	chr10:26758000-26769000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:26758000-26771800	Weak transcription	A549	lung
7	chr10:26758400-26766000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:26758400-26766600	Genic enhancers	Fetal Thymus	thymus
9	chr10:26760000-26768800	Weak transcription	Spleen	Spleen
10	chr10:26761200-26769000	Weak transcription	Lung	lung
11	chr10:26761400-26767800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:26762600-26766000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:26763000-26766600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:26763200-26768800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:26764000-26766000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:26764000-26767000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:26764000-26768600	Weak transcription	Adipose Nuclei	Adipose
18	chr10:26764000-26769800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:26764000-26772600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:26764200-26766000	Weak transcription	Primary B cells from cord blood	blood
21	chr10:26764200-26766000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:26764400-26766000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:26764400-26768800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:26764600-26766200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:26764600-26767000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:26764600-26767000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:26764600-26768400	Enhancers	Primary T cells from cord blood	blood
28	chr10:26764600-26769000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:26764800-26766000	Enhancers	Thymus	Thymus
30	chr10:26764800-26768800	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr10:26765000-26766000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr10:26765000-26766400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr10:26765000-26766400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:26765000-26766400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:26765000-26766400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:26765000-26766600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:26765000-26768800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:26765200-26766200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:26765200-26766600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:26765400-26766400	Genic enhancers	Dnd41	blood
41	chr10:26765400-26766600	Strong transcription	GM12878-XiMat	blood
42	chr10:26765400-26766800	Strong transcription	Primary monocytes fromperipheralblood	blood

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