Variant report

Variant	rs17755397
Chromosome Location	chr15:73143521-73143522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12594060	0.82[EUR][1000 genomes]
rs1593508	0.81[EUR][1000 genomes]
rs4777560	0.83[EUR][1000 genomes]
rs6495021	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17755397	LARP6	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73138600-73144400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr15:73140800-73144000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:73141600-73144800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:73142600-73145400	Enhancers	Fetal Muscle Leg	muscle
5	chr15:73142800-73145200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr15:73143000-73143600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:73143200-73144000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr15:73143200-73144000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr15:73143200-73144800	Enhancers	Fetal Brain Male	brain
10	chr15:73143400-73143600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr15:73143400-73143600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr15:73143400-73144200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr15:73143400-73144200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links