Variant report

Variant	rs4777560
Chromosome Location	chr15:73145702-73145703
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11072390	0.94[ASN][1000 genomes]
rs12443420	0.80[EUR][1000 genomes]
rs12594060	0.85[EUR][1000 genomes]
rs1593508	0.84[EUR][1000 genomes]
rs16957315	0.82[EUR][1000 genomes]
rs17755397	0.83[EUR][1000 genomes]
rs2053856	0.96[ASN][1000 genomes]
rs3850987	0.83[EUR][1000 genomes]
rs4777552	0.94[ASN][1000 genomes]
rs4777555	0.94[ASN][1000 genomes]
rs4777556	0.95[ASN][1000 genomes]
rs4777559	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs60305148	0.82[EUR][1000 genomes]
rs61632994	0.81[EUR][1000 genomes]
rs6495021	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921259	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73144000-73149000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr15:73144400-73150000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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