Variant report

Variant	rs16957315
Chromosome Location	chr15:73104258-73104259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11072384	0.82[CHB][hapmap]
rs12439375	0.81[CHB][hapmap]
rs12443420	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12594060	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12594844	0.86[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs12594938	0.86[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap]
rs1593508	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16957293	0.86[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs2278543	0.86[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs3759870	0.86[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs3850987	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4776611	0.82[CHB][hapmap]
rs4776616	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4777529	0.82[CHB][hapmap]
rs4777530	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4777533	0.82[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap]
rs4777540	0.86[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap]
rs4777543	0.86[CHB][hapmap]
rs4777560	0.82[EUR][1000 genomes]
rs58232781	0.97[ASN][1000 genomes]
rs60305148	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61632994	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6495021	0.82[EUR][1000 genomes]
rs7178409	0.82[CHB][hapmap];0.86[CHD][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs730180	0.82[MEX][hapmap]
rs7497429	0.83[JPT][hapmap]
rs8032586	0.86[CHB][hapmap];0.88[CHD][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv984209	chr15:73098293-73108437	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73098600-73112000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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