Variant report

Variant	rs3850987
Chromosome Location	chr15:73101780-73101781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73095643..73098434-chr15:73099404..73102029,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11072384	0.86[CHB][hapmap]
rs12439375	0.85[CHB][hapmap]
rs12443420	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594060	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12594844	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap]
rs12594938	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs1593508	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16957293	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap]
rs16957315	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2278543	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap]
rs2415166	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3759870	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap]
rs3850988	0.83[CHB][hapmap]
rs4776611	0.87[CHB][hapmap]
rs4776616	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4777529	0.87[CHB][hapmap]
rs4777530	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs4777533	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4777540	0.91[CHB][hapmap];0.83[JPT][hapmap];0.96[TSI][hapmap]
rs4777543	0.91[CHB][hapmap]
rs4777560	0.83[EUR][1000 genomes]
rs58232781	0.95[ASN][1000 genomes]
rs60305148	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61632994	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495021	0.83[EUR][1000 genomes]
rs7178409	0.86[CHB][hapmap];0.96[TSI][hapmap]
rs7495022	0.80[ASN][1000 genomes]
rs7497429	0.83[JPT][hapmap]
rs8032586	0.90[CHB][hapmap];0.92[TSI][hapmap]
rs8033644	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv984209	chr15:73098293-73108437	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73098600-73112000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:73100600-73103000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:73100800-73103000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr15:73101000-73102200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:73101000-73102400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:73101200-73101800	Enhancers	Primary B cells from peripheral blood	blood
7	chr15:73101200-73102200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:73101200-73102400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:73101400-73102000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr15:73101400-73102400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:73101400-73102400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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