Variant report

Variant	rs2415166
Chromosome Location	chr15:73092054-73092055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73072574..73074689-chr15:73091514..73094026,2	K562	blood:
2	chr15:73090912..73092510-chr15:73095226..73098076,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11072387	0.91[ASN][1000 genomes]
rs12439375	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12440951	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12443420	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12594667	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12594844	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12594938	0.91[ASN][1000 genomes]
rs16957293	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2278543	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28398258	0.91[ASN][1000 genomes]
rs3179616	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35136341	0.86[ASN][1000 genomes]
rs3759870	0.89[ASN][1000 genomes]
rs3850987	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4776616	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4777530	0.85[ASN][1000 genomes]
rs4777531	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4777533	0.88[ASN][1000 genomes]
rs4777537	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4777538	0.88[ASN][1000 genomes]
rs4777540	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4777543	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4777545	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56915357	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57621041	0.85[ASN][1000 genomes]
rs58600393	0.87[ASN][1000 genomes]
rs59049627	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60305148	0.82[AMR][1000 genomes]
rs60601886	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60674997	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61311866	0.91[ASN][1000 genomes]
rs61632994	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62017593	0.88[ASN][1000 genomes]
rs62017598	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62017623	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178409	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72662112	0.87[ASN][1000 genomes]
rs72737337	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7495022	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8032586	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73089800-73092600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:73089800-73092800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:73089800-73092800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:73089800-73092800	Weak transcription	Aorta	Aorta
5	chr15:73089800-73093000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:73089800-73094200	Weak transcription	Fetal Heart	heart
7	chr15:73089800-73094200	Weak transcription	Fetal Kidney	kidney
8	chr15:73090000-73092200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:73090000-73092600	Weak transcription	Adipose Nuclei	Adipose
10	chr15:73090000-73092800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:73090000-73092800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:73090000-73093000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:73090000-73093200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:73090000-73093400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:73090000-73093400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:73090000-73094200	Weak transcription	Right Atrium	heart
17	chr15:73090200-73092200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:73090400-73092200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:73090400-73092600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:73090400-73092800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:73091400-73092400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr15:73091800-73092200	Weak transcription	Fetal Lung	lung

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