Variant report

Variant	rs4777537
Chromosome Location	chr15:73061748-73061749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73059142..73061965-chr15:73074602..73077936,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260898	Chromatin interaction
ENSG00000159322	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11072387	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12439375	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12440951	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441084	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12592955	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12594667	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594844	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594938	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16957293	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012253	0.80[ASN][1000 genomes]
rs2278543	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2415166	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28398258	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28502551	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3179616	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34337823	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35136341	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35958407	0.94[EUR][1000 genomes]
rs3759870	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4776611	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4776616	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4777528	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4777529	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4777530	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4777531	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4777533	0.93[ASN][1000 genomes]
rs4777538	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4777540	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4777543	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4777545	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56915357	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57621041	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58600393	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59049627	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59152128	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60405894	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60601886	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60674997	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61311866	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62017593	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62017598	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62017623	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7178409	0.86[ASN][1000 genomes]
rs72662112	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72737337	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs730180	0.80[ASN][1000 genomes]
rs7495022	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8032586	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73041800-73071000	Strong transcription	Liver	Liver
2	chr15:73043800-73073600	Strong transcription	Fetal Thymus	thymus
3	chr15:73044200-73067600	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr15:73045000-73074200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:73045200-73074200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:73045400-73066400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:73045600-73067400	Strong transcription	Placenta	Placenta
8	chr15:73046800-73067600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:73048600-73075200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:73049000-73063800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:73051200-73062600	Weak transcription	Brain Angular Gyrus	brain
12	chr15:73051200-73062600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr15:73052800-73062000	Weak transcription	Psoas Muscle	Psoas
14	chr15:73053400-73062000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:73053600-73062200	Weak transcription	Brain Anterior Caudate	brain
16	chr15:73053600-73062600	Weak transcription	NHLF	lung
17	chr15:73053600-73063600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:73055000-73062400	Weak transcription	Small Intestine	intestine
19	chr15:73055400-73066600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:73057200-73062400	Weak transcription	HepG2	liver
21	chr15:73057200-73069600	Strong transcription	Hela-S3	cervix
22	chr15:73057800-73067800	Weak transcription	Fetal Heart	heart
23	chr15:73058400-73064800	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr15:73058400-73065000	Strong transcription	Osteobl	bone
25	chr15:73058400-73065200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:73058400-73065600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:73058400-73069000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:73058600-73062600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:73058600-73067400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:73058800-73063200	ZNF genes & repeats	GM12878-XiMat	blood
31	chr15:73058800-73065600	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:73059000-73063200	Weak transcription	Colonic Mucosa	Colon
33	chr15:73059000-73063800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:73059200-73066800	Weak transcription	Fetal Brain Male	brain
35	chr15:73059200-73069600	Strong transcription	HSMM	muscle
36	chr15:73059400-73062000	Weak transcription	K562	blood
37	chr15:73059400-73062600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:73059600-73061800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr15:73059800-73066600	Strong transcription	Adipose Nuclei	Adipose
40	chr15:73060000-73065400	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr15:73060000-73067400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:73060000-73074000	Weak transcription	Stomach Mucosa	stomach
43	chr15:73060000-73075000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr15:73060200-73063200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:73060200-73063800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr15:73060200-73065600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:73060200-73067200	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr15:73060200-73067200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:73060200-73067400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr15:73060200-73067400	Strong transcription	NH-A	brain

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