Variant report

Variant	rs11072390
Chromosome Location	chr15:73136716-73136717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2053856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4777552	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4777555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4777556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4777559	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4777560	0.94[ASN][1000 genomes]
rs6495021	0.94[ASN][1000 genomes]
rs921259	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73131000-73139000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:73136400-73136800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:73136400-73136800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:73136400-73136800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr15:73136400-73136800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:73136400-73137000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:73136600-73137000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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