Variant report

Variant	rs4777559
Chromosome Location	chr15:73142636-73142637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11072390	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2053856	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4777552	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4777555	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4777556	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4777560	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6495021	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs921259	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73138600-73144400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr15:73140800-73143200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:73140800-73144000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:73141400-73143400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:73141600-73144800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:73141800-73143200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:73142600-73143400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:73142600-73145400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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